B3RYR5_TRIAD protein (Trichoplax adhaerens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B3RYR5_TRIAD

CEP44 domain-containing protein. (139 aa)

Predicted Functional Partners:

B3RLB4_TRIAD

0.890

B3S9A1_TRIAD

0.873

B3SBN8_TRIAD

0.843

B3S8H0_TRIAD

0.835

B3RU43_TRIAD

0.707

B3RSQ9_TRIAD

0.681

B3RZD2_TRIAD

0.605

B3RPM6_TRIAD

0.531

B3RV41_TRIAD

0.531

B3RI81_TRIAD

0.530

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RI81_TRIAD	B3RLB4_TRIAD	B3RI81	B3RLB4	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Thymidylat_synt domain-containing protein.	0.999
B3RI81_TRIAD	B3RPM6_TRIAD	B3RI81	B3RPM6	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	dNK domain-containing protein.	0.473
B3RI81_TRIAD	B3RSQ9_TRIAD	B3RI81	B3RSQ9	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Nudix hydrolase domain-containing protein.	0.433
B3RI81_TRIAD	B3RU43_TRIAD	B3RI81	B3RU43	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	dUTPase domain-containing protein.	0.881
B3RI81_TRIAD	B3RV41_TRIAD	B3RI81	B3RV41	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	dNK domain-containing protein.	0.473
B3RI81_TRIAD	B3RYR5_TRIAD	B3RI81	B3RYR5	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	CEP44 domain-containing protein.	0.530
B3RI81_TRIAD	B3RZD2_TRIAD	B3RI81	B3RZD2	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.603
B3RI81_TRIAD	B3S9A1_TRIAD	B3RI81	B3S9A1	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Thymidine kinase.	0.948
B3RI81_TRIAD	B3SBN8_TRIAD	B3RI81	B3SBN8	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Thymidylate_kin domain-containing protein.	0.953
B3RLB4_TRIAD	B3RI81_TRIAD	B3RLB4	B3RI81	Thymidylat_synt domain-containing protein.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.999
B3RLB4_TRIAD	B3RPM6_TRIAD	B3RLB4	B3RPM6	Thymidylat_synt domain-containing protein.	dNK domain-containing protein.	0.971
B3RLB4_TRIAD	B3RSQ9_TRIAD	B3RLB4	B3RSQ9	Thymidylat_synt domain-containing protein.	Nudix hydrolase domain-containing protein.	0.820
B3RLB4_TRIAD	B3RU43_TRIAD	B3RLB4	B3RU43	Thymidylat_synt domain-containing protein.	dUTPase domain-containing protein.	0.997
B3RLB4_TRIAD	B3RV41_TRIAD	B3RLB4	B3RV41	Thymidylat_synt domain-containing protein.	dNK domain-containing protein.	0.971
B3RLB4_TRIAD	B3RYR5_TRIAD	B3RLB4	B3RYR5	Thymidylat_synt domain-containing protein.	CEP44 domain-containing protein.	0.890
B3RLB4_TRIAD	B3RZD2_TRIAD	B3RLB4	B3RZD2	Thymidylat_synt domain-containing protein.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.939
B3RLB4_TRIAD	B3S8H0_TRIAD	B3RLB4	B3S8H0	Thymidylat_synt domain-containing protein.	PNP_UDP_1 domain-containing protein.	0.546
B3RLB4_TRIAD	B3S9A1_TRIAD	B3RLB4	B3S9A1	Thymidylat_synt domain-containing protein.	Thymidine kinase.	0.997
B3RLB4_TRIAD	B3SBN8_TRIAD	B3RLB4	B3SBN8	Thymidylat_synt domain-containing protein.	Thymidylate_kin domain-containing protein.	0.995
B3RPM6_TRIAD	B3RI81_TRIAD	B3RPM6	B3RI81	dNK domain-containing protein.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.473