B3S283_TRIAD protein (Trichoplax adhaerens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B3S283_TRIAD

TPR_REGION domain-containing protein. (844 aa)

Predicted Functional Partners:

B3RVA1_TRIAD

0.996

B3S3W6_TRIAD

0.995

B3S6B6_TRIAD

0.994

B3S7G1_TRIAD

0.994

B3S2G2_TRIAD

0.993

B3SCU5_TRIAD

0.993

B3S6F6_TRIAD

0.992

B3S9Y0_TRIAD

0.992

B3SBN1_TRIAD

0.992

B3RXI1_TRIAD

0.990

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RVA1_TRIAD	B3RXI1_TRIAD	B3RVA1	B3RXI1	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RVA1_TRIAD	B3S283_TRIAD	B3RVA1	B3S283	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.996
B3RVA1_TRIAD	B3S2G2_TRIAD	B3RVA1	B3S2G2	Uncharacterized protein.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
B3RVA1_TRIAD	B3S3W6_TRIAD	B3RVA1	B3S3W6	Uncharacterized protein.	Uncharacterized protein.	0.990
B3RVA1_TRIAD	B3S6B6_TRIAD	B3RVA1	B3S6B6	Uncharacterized protein.	Uncharacterized protein.	0.997
B3RVA1_TRIAD	B3S6F6_TRIAD	B3RVA1	B3S6F6	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RVA1_TRIAD	B3S7G1_TRIAD	B3RVA1	B3S7G1	Uncharacterized protein.	Uncharacterized protein.	0.998
B3RVA1_TRIAD	B3S9Y0_TRIAD	B3RVA1	B3S9Y0	Uncharacterized protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
B3RVA1_TRIAD	B3SBN1_TRIAD	B3RVA1	B3SBN1	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
B3RVA1_TRIAD	B3SCU5_TRIAD	B3RVA1	B3SCU5	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
B3RXI1_TRIAD	B3RVA1_TRIAD	B3RXI1	B3RVA1	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RXI1_TRIAD	B3S283_TRIAD	B3RXI1	B3S283	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.990
B3RXI1_TRIAD	B3S2G2_TRIAD	B3RXI1	B3S2G2	Uncharacterized protein.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
B3RXI1_TRIAD	B3S3W6_TRIAD	B3RXI1	B3S3W6	Uncharacterized protein.	Uncharacterized protein.	0.986
B3RXI1_TRIAD	B3S6B6_TRIAD	B3RXI1	B3S6B6	Uncharacterized protein.	Uncharacterized protein.	0.993
B3RXI1_TRIAD	B3S6F6_TRIAD	B3RXI1	B3S6F6	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RXI1_TRIAD	B3S7G1_TRIAD	B3RXI1	B3S7G1	Uncharacterized protein.	Uncharacterized protein.	0.999
B3RXI1_TRIAD	B3S9Y0_TRIAD	B3RXI1	B3S9Y0	Uncharacterized protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
B3RXI1_TRIAD	B3SBN1_TRIAD	B3RXI1	B3SBN1	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
B3RXI1_TRIAD	B3SCU5_TRIAD	B3RXI1	B3SCU5	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999