B3S6D0_TRIAD protein (Trichoplax adhaerens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B3S6D0_TRIAD

Uncharacterized protein. (817 aa)

Predicted Functional Partners:

B3RQF3_TRIAD

0.998

B3SD12_TRIAD

0.976

B3RWE3_TRIAD

0.975

B3RLC4_TRIAD

0.958

B3S2F7_TRIAD

0.958

B3RPU8_TRIAD

0.917

B3S868_TRIAD

0.893

B3RJ73_TRIAD

0.889

B3S3R6_TRIAD

0.889

B3S0T1_TRIAD

0.869

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RJ73_TRIAD	B3RLC4_TRIAD	B3RJ73	B3RLC4	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.518
B3RJ73_TRIAD	B3RPU8_TRIAD	B3RJ73	B3RPU8	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.856
B3RJ73_TRIAD	B3RQF3_TRIAD	B3RJ73	B3RQF3	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.943
B3RJ73_TRIAD	B3S0T1_TRIAD	B3RJ73	B3S0T1	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.878
B3RJ73_TRIAD	B3S6D0_TRIAD	B3RJ73	B3S6D0	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.889
B3RJ73_TRIAD	B3S868_TRIAD	B3RJ73	B3S868	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.902
B3RJ73_TRIAD	B3SD12_TRIAD	B3RJ73	B3SD12	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.935
B3RLC4_TRIAD	B3RJ73_TRIAD	B3RLC4	B3RJ73	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.518
B3RLC4_TRIAD	B3RPU8_TRIAD	B3RLC4	B3RPU8	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.917
B3RLC4_TRIAD	B3RQF3_TRIAD	B3RLC4	B3RQF3	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.936
B3RLC4_TRIAD	B3RWE3_TRIAD	B3RLC4	B3RWE3	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.506
B3RLC4_TRIAD	B3S0T1_TRIAD	B3RLC4	B3S0T1	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.865
B3RLC4_TRIAD	B3S2F7_TRIAD	B3RLC4	B3S2F7	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.999
B3RLC4_TRIAD	B3S3R6_TRIAD	B3RLC4	B3S3R6	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.521
B3RLC4_TRIAD	B3S6D0_TRIAD	B3RLC4	B3S6D0	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.958
B3RLC4_TRIAD	B3S868_TRIAD	B3RLC4	B3S868	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.958
B3RLC4_TRIAD	B3SD12_TRIAD	B3RLC4	B3SD12	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.640
B3RPU8_TRIAD	B3RJ73_TRIAD	B3RPU8	B3RJ73	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.856
B3RPU8_TRIAD	B3RLC4_TRIAD	B3RPU8	B3RLC4	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.917
B3RPU8_TRIAD	B3RQF3_TRIAD	B3RPU8	B3RQF3	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.999