STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx43ATP-dependent RNA helicase DDX43. (646 aa)    
Predicted Functional Partners:
Fau
FAU, ubiquitin like and ribosomal protein S30 fusion.
   
 0.628
ENSNGAP00000016335
Small subunit ribosomal protein S30e.
   
 0.628
Bop1
Ribosome biogenesis protein ERB1.
   
 0.581
Nop58
NOP58 ribonucleoprotein.
  
 0.560
Pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.533
Gtpbp4
Nucleolar GTP-binding protein.
   
 0.529
ENSNGAP00000023886
annotation not available
  
 
 
 0.525
Rbm8a
RNA binding motif protein 8A.
    
 0.522
Ranbp2
E3 SUMO-protein ligase RanBP2.
   
 0.516
Sf3b3
Splicing factor 3B subunit 3.
   
 0.516
Your Current Organism:
Nannospalax galili
NCBI taxonomy Id: 1026970
Other names: N. galili, Nannospalax ehrenbergi galili, Spalax galili, Spalax galili Nevo, Ivanitskaya & Beiles 2001, Upper Galilee mountains blind mole rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.