STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN34120.1ABC-2 type transport system permease protein. (231 aa)    
Predicted Functional Partners:
SHN34110.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.950
SHN34101.1
Transcriptional regulator, LytTR family.
 
     0.889
SHN23100.1
ABC-2 type transport system permease protein.
 
    0.648
SHM51234.1
Hypothetical protein.
  
     0.600
SHN23083.1
Hypothetical protein.
  
 
   0.596
SHM51354.1
Hypothetical protein.
  
     0.594
SHN34076.1
Bla regulator protein blaR1.
 
     0.590
SHN23091.1
ABC-2 type transport system permease protein.
 
    0.580
SHM51276.1
Energy-coupling factor transport system permease protein.
  
     0.577
SHM45606.1
Adenylate kinase.
  
     0.564
Your Current Organism:
Gracilibacillus kekensis
NCBI taxonomy Id: 1027249
Other names: CGMCC 1.10681, DSM 23178, G. kekensis, Gracilibacillus kekensis Gao et al. 2012, Gracilibacillus sp. K170, strain K170
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.