STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAA13985.1Putative hydrolase. (261 aa)    
Predicted Functional Partners:
GAA13986.1
Hypothetical protein.
 
     0.891
GAA13983.1
Putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.783
GAA13984.1
Putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.783
GAA13982.1
Hypothetical protein.
       0.728
nudC
NADH pyrophosphatase.
       0.685
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
 
  
 0.571
GAA13263.1
Putative hydrolase.
  
   
 0.501
pks13
Polyketide synthase Pks13.
 
 
 0.431
GAA14676.1
Putative fatty-acid--CoA ligase.
 
 
 
 0.411
Your Current Organism:
Gordonia alkanivorans
NCBI taxonomy Id: 1027371
Other names: G. alkanivorans NBRC 16433, Gordonia alkanivorans CIP 106363, Gordonia alkanivorans DSM 44369, Gordonia alkanivorans NBRC 16433, Gordonia alkanivorans str. NBRC 16433, Gordonia alkanivorans strain NBRC 16433
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