Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMG15763.1 | SMG15764.1 | SAMN05661096_00802 | SAMN05661096_00803 | ApaG protein. | Methyltransferase domain-containing protein. | 0.639 |
SMG15763.1 | rsmA | SAMN05661096_00802 | SAMN05661096_01730 | ApaG protein. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.750 |
SMG15763.1 | ung | SAMN05661096_00802 | SAMN05661096_00801 | ApaG protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.593 |
SMG15764.1 | SMG15763.1 | SAMN05661096_00803 | SAMN05661096_00802 | Methyltransferase domain-containing protein. | ApaG protein. | 0.639 |
SMG15764.1 | ung | SAMN05661096_00803 | SAMN05661096_00801 | Methyltransferase domain-containing protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.436 |
rsmA | SMG15763.1 | SAMN05661096_01730 | SAMN05661096_00802 | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | ApaG protein. | 0.750 |
ung | SMG15763.1 | SAMN05661096_00801 | SAMN05661096_00802 | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | ApaG protein. | 0.593 |
ung | SMG15764.1 | SAMN05661096_00801 | SAMN05661096_00803 | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | Methyltransferase domain-containing protein. | 0.436 |