STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG25373.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
  0.938
SMG25365.1
Cell division protein ZapA.
 
     0.921
SMG37305.1
Tetratricopeptide repeat-containing protein.
  
     0.763
SMG53208.1
Hypothetical protein.
  
     0.763
SMG17142.1
Hypothetical protein.
  
     0.762
SMG16347.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.739
SMG17513.1
WD40-like Beta Propeller Repeat.
  
     0.713
SMG40119.1
Hypothetical protein.
  
     0.713
SMG38343.1
Hypothetical protein.
  
     0.703
SMG07225.1
Hypothetical protein.
  
     0.700
Your Current Organism:
Marivirga sericea
NCBI taxonomy Id: 1028
Other names: ATCC 23182, DSM 4125, IFO 15983, LMG 13021, LMG:13021, M. sericea, Microscilla sericea, NBRC 15983
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.