STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG27446.1Protein of unknown function. (176 aa)    
Predicted Functional Partners:
SMG27423.1
ABC-2 family transporter protein.
 
     0.833
SMG43772.1
LETM1-like protein.
  
     0.699
SMG27430.1
ABC-2 type transport system ATP-binding protein.
 
     0.644
SMG45484.1
Hypothetical protein.
  
     0.599
SMG28797.1
PKD domain-containing protein.
  
     0.591
SMG29143.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.589
SMG27459.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.576
SMG29133.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.570
SMG29110.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.565
SMG10945.1
Hypothetical protein.
  
     0.561
Your Current Organism:
Marivirga sericea
NCBI taxonomy Id: 1028
Other names: ATCC 23182, DSM 4125, IFO 15983, LMG 13021, LMG:13021, M. sericea, Microscilla sericea, NBRC 15983
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.