STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG34699.1Putative MetA-pathway of phenol degradation. (267 aa)    
Predicted Functional Partners:
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.780
SMG53545.1
Putative MetA-pathway of phenol degradation.
  
     0.770
SMG34709.1
Nitrilase.
       0.754
SMG29655.1
Hypothetical protein.
  
     0.580
SMG53090.1
C-terminal domain of CHU protein family protein.
  
     0.541
SMG34672.1
Outer membrane receptor for ferrienterochelin and colicins.
       0.523
SMG12132.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.518
SMG28797.1
PKD domain-containing protein.
  
     0.509
SMG15779.1
Lipid A 3-O-deacylase (PagL).
  
     0.471
SMG08495.1
PKD repeat-containing protein.
  
     0.465
Your Current Organism:
Marivirga sericea
NCBI taxonomy Id: 1028
Other names: ATCC 23182, DSM 4125, IFO 15983, LMG 13021, LMG:13021, M. sericea, Microscilla sericea, NBRC 15983
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