Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMG08505.1 | SMG12482.1 | SAMN05661096_00144 | SAMN05661096_00511 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.497 |
SMG08505.1 | SMG13117.1 | SAMN05661096_00144 | SAMN05661096_00577 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.634 |
SMG08505.1 | SMG13319.1 | SAMN05661096_00144 | SAMN05661096_00588 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Hypothetical protein. | 0.634 |
SMG08505.1 | SMG18004.1 | SAMN05661096_00144 | SAMN05661096_01016 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. | 0.964 |
SMG08505.1 | SMG21769.1 | SAMN05661096_00144 | SAMN05661096_01228 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Ribose 5-phosphate isomerase B. | 0.473 |
SMG08505.1 | SMG38374.1 | SAMN05661096_00144 | SAMN05661096_02532 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Transketolase. | 0.845 |
SMG08505.1 | SMG38385.1 | SAMN05661096_00144 | SAMN05661096_02534 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Transketolase. | 0.820 |
SMG08505.1 | deoC | SAMN05661096_00144 | SAMN05661096_01618 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.878 |
SMG08505.1 | pgi | SAMN05661096_00144 | SAMN05661096_02132 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.936 |
SMG08505.1 | tal | SAMN05661096_00144 | SAMN05661096_01611 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. | 0.861 |
SMG12482.1 | SMG08505.1 | SAMN05661096_00511 | SAMN05661096_00144 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.497 |
SMG12482.1 | SMG13117.1 | SAMN05661096_00511 | SAMN05661096_00577 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.618 |
SMG12482.1 | SMG13319.1 | SAMN05661096_00511 | SAMN05661096_00588 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Hypothetical protein. | 0.618 |
SMG12482.1 | SMG21769.1 | SAMN05661096_00511 | SAMN05661096_01228 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Ribose 5-phosphate isomerase B. | 0.892 |
SMG12482.1 | SMG38374.1 | SAMN05661096_00511 | SAMN05661096_02532 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Transketolase. | 0.992 |
SMG12482.1 | SMG38385.1 | SAMN05661096_00511 | SAMN05661096_02534 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Transketolase. | 0.914 |
SMG12482.1 | tal | SAMN05661096_00511 | SAMN05661096_01611 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. | 0.803 |
SMG13117.1 | SMG08505.1 | SAMN05661096_00577 | SAMN05661096_00144 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.634 |
SMG13117.1 | SMG12482.1 | SAMN05661096_00577 | SAMN05661096_00511 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.618 |
SMG13117.1 | SMG13319.1 | SAMN05661096_00577 | SAMN05661096_00588 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Hypothetical protein. | 0.999 |
page 1 of 5