STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG43689.1Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains. (262 aa)    
Predicted Functional Partners:
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
  
 0.832
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
  0.825
SMG43695.1
Cytochrome c-type biogenesis protein CcmF.
       0.801
SMG43706.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.770
SMG43723.1
Heme exporter protein C.
       0.625
SMG43716.1
Hypothetical protein.
       0.618
SMG43730.1
Heme exporter protein B.
       0.554
panD
L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
 
     0.504
SMG43679.1
4-hydroxybenzoate polyprenyltransferase.
       0.489
SMG21031.1
uroporphyrinogen-III synthase.
  
     0.454
Your Current Organism:
Marivirga sericea
NCBI taxonomy Id: 1028
Other names: ATCC 23182, DSM 4125, IFO 15983, LMG 13021, LMG:13021, M. sericea, Microscilla sericea, NBRC 15983
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