Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMG13117.1 | SMG13319.1 | SAMN05661096_00577 | SAMN05661096_00588 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Hypothetical protein. | 0.999 |
SMG13117.1 | SMG20034.1 | SAMN05661096_00577 | SAMN05661096_01067 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. | 0.908 |
SMG13117.1 | SMG34853.1 | SAMN05661096_00577 | SAMN05661096_02262 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.918 |
SMG13117.1 | SMG37178.1 | SAMN05661096_00577 | SAMN05661096_02428 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Citrate synthase; Belongs to the citrate synthase family. | 0.957 |
SMG13117.1 | SMG48683.1 | SAMN05661096_00577 | SAMN05661096_03503 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Malate synthase; Belongs to the malate synthase family. | 0.872 |
SMG13117.1 | SMG48868.1 | SAMN05661096_00577 | SAMN05661096_03539 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.933 |
SMG13117.1 | SMG52745.1 | SAMN05661096_00577 | SAMN05661096_04003 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.918 |
SMG13117.1 | SMG52773.1 | SAMN05661096_00577 | SAMN05661096_04005 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.953 |
SMG13117.1 | sucC | SAMN05661096_00577 | SAMN05661096_00886 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.972 |
SMG13117.1 | sucD | SAMN05661096_00577 | SAMN05661096_02661 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.976 |
SMG13319.1 | SMG13117.1 | SAMN05661096_00588 | SAMN05661096_00577 | Hypothetical protein. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.999 |
SMG13319.1 | SMG20034.1 | SAMN05661096_00588 | SAMN05661096_01067 | Hypothetical protein. | Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family. | 0.908 |
SMG13319.1 | SMG34853.1 | SAMN05661096_00588 | SAMN05661096_02262 | Hypothetical protein. | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.918 |
SMG13319.1 | SMG37178.1 | SAMN05661096_00588 | SAMN05661096_02428 | Hypothetical protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.957 |
SMG13319.1 | SMG48683.1 | SAMN05661096_00588 | SAMN05661096_03503 | Hypothetical protein. | Malate synthase; Belongs to the malate synthase family. | 0.872 |
SMG13319.1 | SMG48868.1 | SAMN05661096_00588 | SAMN05661096_03539 | Hypothetical protein. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.933 |
SMG13319.1 | SMG52745.1 | SAMN05661096_00588 | SAMN05661096_04003 | Hypothetical protein. | acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.918 |
SMG13319.1 | SMG52773.1 | SAMN05661096_00588 | SAMN05661096_04005 | Hypothetical protein. | 3-hydroxyacyl-CoA dehydrogenase. | 0.953 |
SMG13319.1 | sucC | SAMN05661096_00588 | SAMN05661096_00886 | Hypothetical protein. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.972 |
SMG13319.1 | sucD | SAMN05661096_00588 | SAMN05661096_02661 | Hypothetical protein. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.976 |
page 1 of 6