STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG52143.1Lamin Tail Domain. (1227 aa)    
Predicted Functional Partners:
SMG33403.1
Hypothetical protein.
  
     0.770
SMG33400.1
Helix-hairpin-helix motif-containing protein.
  
     0.726
SMG44263.1
Hypothetical protein.
  
     0.715
SMG21026.1
Hypothetical protein.
  
     0.689
SMG45298.1
Hypothetical protein.
  
     0.678
SMG29471.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.651
SMG28604.1
Hypothetical protein.
  
     0.648
SMG37169.1
PKD domain-containing protein.
  
     0.632
SMG16827.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.630
SMG20183.1
CarboxypepD_reg-like domain-containing protein.
  
     0.619
Your Current Organism:
Marivirga sericea
NCBI taxonomy Id: 1028
Other names: ATCC 23182, DSM 4125, IFO 15983, LMG 13021, LMG:13021, M. sericea, Microscilla sericea, NBRC 15983
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.