STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG52568.1YceI-like domain-containing protein. (193 aa)    
Predicted Functional Partners:
SMG52573.1
Hypothetical protein.
 
     0.894
SMG52577.1
YceI-like domain-containing protein; Belongs to the UPF0312 family.
 
     0.885
SMG23359.1
Hypothetical protein.
 
     0.783
SMG52564.1
Putative transcriptional regulator.
       0.613
SMG52566.1
Protein of unknown function.
       0.613
SMG07622.1
SatD family (SatD).
  
     0.582
SMG07618.1
Protein of unknown function.
  
     0.553
SMG34991.1
Hypothetical protein.
  
     0.467
SMG43432.1
Hypothetical protein.
  
     0.455
SMG18028.1
Hypothetical protein.
  
 
   0.420
Your Current Organism:
Marivirga sericea
NCBI taxonomy Id: 1028
Other names: ATCC 23182, DSM 4125, IFO 15983, LMG 13021, LMG:13021, M. sericea, Microscilla sericea, NBRC 15983
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.