STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSCI_4435Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (285 aa)    
Predicted Functional Partners:
PSCI_4436
Ser/Thr protein phosphatase family protein.
       0.769
PSCI_4856
Dehydrogenase.
  
 
 
 0.739
PSCI_2666
Non-ribosomal peptide synthetase PvdD.
  
 
 0.678
PSCI_2668
Pyoverdine sidechain peptide synthetase.
  
  
 0.645
PSCI_3350
Oxidoreductase, short chain dehydrogenase/reductase family protein.
  
 
 
 0.619
PSCI_0734
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.560
PSCI_4434
Transport transmembrane protein.
       0.541
PSCI_4437
LysR family transcriptional regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.530
PSCI_4430
HAD family hydrolase.
 
   
 0.529
ucpA
Short-chain dehydrogenase/reductase.
  
 
 
 0.496
Your Current Organism:
Pseudomonas sp. StFLB209
NCBI taxonomy Id: 1028989
Other names: P. sp. StFLB209
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