STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFBM_0450ABC transporter, extracellular solute-binding protein. (583 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, permease protein.
 0.995
SFBM_0446
Oligopeptide ABC transporter, permease component.
 
 0.995
appD
Oligopeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.988
oppF6
Oligopeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.986
SFBM_0449
ABC transporter, extracellular solute-binding protein.
 
  
 
0.954
SFBM_1022
Putative transporter.
  
  
 
0.919
SFBM_0557
Pyruvate ferredoxin oxidoreductase.
  
    0.770
SFBM_1074
Hypothetical protein.
 
  
 0.495
Your Current Organism:
Arthromitus sp. SFBmouseJapan
NCBI taxonomy Id: 1029718
Other names: C. Arthromitus sp. SFB-mouse-Japan, Candidatus Arthromitus sp. SFB-mouse-Japan
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.