SFBM_0646 protein (Arthromitus sp. SFBmouseJapan)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFBM_0646

Phosphonate ABC transporter permease. (268 aa)

Predicted Functional Partners:

phnC

0.993

SFBM_0643

0.985

SFBM_0645

0.985

SFBM_0647

0.895

SFBM_0648

0.452

Your Current Organism:

Arthromitus sp. SFBmouseJapan

NCBI taxonomy Id: 1029718
Other names: C. Arthromitus sp. SFB-mouse-Japan, Candidatus Arthromitus sp. SFB-mouse-Japan

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFBM_0643	SFBM_0645	SFBM_0643	SFBM_0645	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	Phosphonate ABC transporter, inner membrane subunit.	0.985
SFBM_0643	SFBM_0646	SFBM_0643	SFBM_0646	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	Phosphonate ABC transporter permease.	0.985
SFBM_0643	SFBM_0647	SFBM_0643	SFBM_0647	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	0.895
SFBM_0643	phnC	SFBM_0643	SFBM_0644	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.994
SFBM_0645	SFBM_0643	SFBM_0645	SFBM_0643	Phosphonate ABC transporter, inner membrane subunit.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	0.985
SFBM_0645	SFBM_0646	SFBM_0645	SFBM_0646	Phosphonate ABC transporter, inner membrane subunit.	Phosphonate ABC transporter permease.	0.985
SFBM_0645	SFBM_0647	SFBM_0645	SFBM_0647	Phosphonate ABC transporter, inner membrane subunit.	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	0.862
SFBM_0645	phnC	SFBM_0645	SFBM_0644	Phosphonate ABC transporter, inner membrane subunit.	Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.993
SFBM_0646	SFBM_0643	SFBM_0646	SFBM_0643	Phosphonate ABC transporter permease.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	0.985
SFBM_0646	SFBM_0645	SFBM_0646	SFBM_0645	Phosphonate ABC transporter permease.	Phosphonate ABC transporter, inner membrane subunit.	0.985
SFBM_0646	SFBM_0647	SFBM_0646	SFBM_0647	Phosphonate ABC transporter permease.	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	0.895
SFBM_0646	SFBM_0648	SFBM_0646	SFBM_0648	Phosphonate ABC transporter permease.	2,5-diketo-D-gluconic acid reductase.	0.452
SFBM_0646	phnC	SFBM_0646	SFBM_0644	Phosphonate ABC transporter permease.	Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.993
SFBM_0647	SFBM_0643	SFBM_0647	SFBM_0643	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein.	0.895
SFBM_0647	SFBM_0645	SFBM_0647	SFBM_0645	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	Phosphonate ABC transporter, inner membrane subunit.	0.862
SFBM_0647	SFBM_0646	SFBM_0647	SFBM_0646	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	Phosphonate ABC transporter permease.	0.895
SFBM_0647	SFBM_0648	SFBM_0647	SFBM_0648	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	2,5-diketo-D-gluconic acid reductase.	0.407
SFBM_0647	phnC	SFBM_0647	SFBM_0644	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	Phosphonate ABC transporter, ATPase subunit; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.884
SFBM_0648	SFBM_0646	SFBM_0648	SFBM_0646	2,5-diketo-D-gluconic acid reductase.	Phosphonate ABC transporter permease.	0.452
SFBM_0648	SFBM_0647	SFBM_0648	SFBM_0647	2,5-diketo-D-gluconic acid reductase.	Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Belongs to the 5'-nucleotidase family.	0.407