Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFBM_0198 | SFBM_0557 | SFBM_0198 | SFBM_0557 | Shikimate 5-dehydrogenase. | Pyruvate ferredoxin oxidoreductase. | 0.496 |
| SFBM_0198 | SFBM_1201 | SFBM_0198 | SFBM_1201 | Shikimate 5-dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.941 |
| SFBM_0198 | SFBM_1204 | SFBM_0198 | SFBM_1204 | Shikimate 5-dehydrogenase. | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 0.694 |
| SFBM_0198 | aroA | SFBM_0198 | SFBM_1203 | Shikimate 5-dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.946 |
| SFBM_0198 | aroC | SFBM_0198 | SFBM_1202 | Shikimate 5-dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.964 |
| SFBM_0198 | aroK | SFBM_0198 | SFBM_0200 | Shikimate 5-dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.999 |
| SFBM_0198 | guaA | SFBM_0198 | SFBM_0640 | Shikimate 5-dehydrogenase. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.749 |
| SFBM_0557 | SFBM_0198 | SFBM_0557 | SFBM_0198 | Pyruvate ferredoxin oxidoreductase. | Shikimate 5-dehydrogenase. | 0.496 |
| SFBM_0557 | aroC | SFBM_0557 | SFBM_1202 | Pyruvate ferredoxin oxidoreductase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.951 |
| SFBM_0557 | aroK | SFBM_0557 | SFBM_0200 | Pyruvate ferredoxin oxidoreductase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.430 |
| SFBM_0557 | nadE | SFBM_0557 | SFBM_0216 | Pyruvate ferredoxin oxidoreductase. | Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.473 |
| SFBM_1201 | SFBM_0198 | SFBM_1201 | SFBM_0198 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate 5-dehydrogenase. | 0.941 |
| SFBM_1201 | SFBM_1204 | SFBM_1201 | SFBM_1204 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 0.995 |
| SFBM_1201 | aroA | SFBM_1201 | SFBM_1203 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.997 |
| SFBM_1201 | aroC | SFBM_1201 | SFBM_1202 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.997 |
| SFBM_1201 | aroK | SFBM_1201 | SFBM_0200 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.999 |
| SFBM_1201 | hisS | SFBM_1201 | SFBM_0856 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | histidyl-tRNA synthetase. | 0.455 |
| SFBM_1204 | SFBM_0198 | SFBM_1204 | SFBM_0198 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | Shikimate 5-dehydrogenase. | 0.694 |
| SFBM_1204 | SFBM_1201 | SFBM_1204 | SFBM_1201 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.995 |
| SFBM_1204 | aroA | SFBM_1204 | SFBM_1203 | Phospho-2-dehydro-3-deoxyheptonate aldolase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.921 |
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