STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFBM_1365Cobalt ABC transporter, permease protein. (263 aa)    
Predicted Functional Partners:
SFBM_1366
Cobalt ABC transporter, ATP-binding protein.
 0.999
SFBM_1367
Cobalt ABC transporter protein CbiO.
 0.999
SFBM_1161
Hypothetical protein.
 
 0.982
SFBM_1477
Cobalt ABC transporter, ATP-binding protein.
 
 
 0.978
truA
tRNA pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.974
SFBM_1478
Cobalt ABC transporter, permease.
  
  
 
0.912
SFBM_1476
Hypothetical protein; Similar to DUF1393 domain-containing protein.
  
 
 0.852
SFBM_0406
Hypothetical protein.
   
 
 0.836
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
     
 0.613
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
  
 0.600
Your Current Organism:
Arthromitus sp. SFBmouseJapan
NCBI taxonomy Id: 1029718
Other names: C. Arthromitus sp. SFB-mouse-Japan, Candidatus Arthromitus sp. SFB-mouse-Japan
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.