STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFBM_1444Stage V sporulation protein B. (511 aa)    
Predicted Functional Partners:
SFBM_0840
Hypothetical protein.
  
     0.727
SFBM_1473
Glutamine synthetase.
 
     0.685
SFBM_0537
Hypothetical protein.
  
     0.638
SFBM_1445
Stage V sporulation protein T.
 
   
 0.632
SFBM_1412
RNA polymerase factor sigma-70.
  
    0.528
SFBM_1442
RNA-binding S4 domain-containing protein.
  
    0.528
SFBM_1485
ATP-dependent protease.
  
     0.524
HimA
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.510
SFBM_1490
Hypothetical protein.
  
     0.479
SFBM_1441
Sporulation protein.
  
  
 0.472
Your Current Organism:
Arthromitus sp. SFBmouseJapan
NCBI taxonomy Id: 1029718
Other names: C. Arthromitus sp. SFB-mouse-Japan, Candidatus Arthromitus sp. SFB-mouse-Japan
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