Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFBM_0058 | SFBM_0082 | SFBM_0058 | SFBM_0082 | Single-stranded DNA-binding protein. | DNA polymerase III, alpha subunit. | 0.825 |
| SFBM_0058 | SFBM_1423 | SFBM_0058 | SFBM_1423 | Single-stranded DNA-binding protein. | DNA polymerase III subunit delta'. | 0.689 |
| SFBM_0058 | SFBM_1501 | SFBM_0058 | SFBM_1501 | Single-stranded DNA-binding protein. | Single-strand binding protein. | 0.910 |
| SFBM_0058 | dnaX | SFBM_0058 | SFBM_0032 | Single-stranded DNA-binding protein. | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.703 |
| SFBM_0058 | priA | SFBM_0058 | SFBM_0598 | Single-stranded DNA-binding protein. | Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.770 |
| SFBM_0058 | rplJ | SFBM_0058 | SFBM_1405 | Single-stranded DNA-binding protein. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.615 |
| SFBM_0058 | rpsF | SFBM_0058 | SFBM_1502 | Single-stranded DNA-binding protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.696 |
| SFBM_0058 | topA | SFBM_0058 | SFBM_0717 | Single-stranded DNA-binding protein. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.962 |
| SFBM_0082 | SFBM_0058 | SFBM_0082 | SFBM_0058 | DNA polymerase III, alpha subunit. | Single-stranded DNA-binding protein. | 0.825 |
| SFBM_0082 | SFBM_1423 | SFBM_0082 | SFBM_1423 | DNA polymerase III, alpha subunit. | DNA polymerase III subunit delta'. | 0.985 |
| SFBM_0082 | SFBM_1501 | SFBM_0082 | SFBM_1501 | DNA polymerase III, alpha subunit. | Single-strand binding protein. | 0.825 |
| SFBM_0082 | dnaX | SFBM_0082 | SFBM_0032 | DNA polymerase III, alpha subunit. | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.988 |
| SFBM_0082 | topA | SFBM_0082 | SFBM_0717 | DNA polymerase III, alpha subunit. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.785 |
| SFBM_1423 | SFBM_0058 | SFBM_1423 | SFBM_0058 | DNA polymerase III subunit delta'. | Single-stranded DNA-binding protein. | 0.689 |
| SFBM_1423 | SFBM_0082 | SFBM_1423 | SFBM_0082 | DNA polymerase III subunit delta'. | DNA polymerase III, alpha subunit. | 0.985 |
| SFBM_1423 | SFBM_1501 | SFBM_1423 | SFBM_1501 | DNA polymerase III subunit delta'. | Single-strand binding protein. | 0.689 |
| SFBM_1423 | dnaX | SFBM_1423 | SFBM_0032 | DNA polymerase III subunit delta'. | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.922 |
| SFBM_1423 | topA | SFBM_1423 | SFBM_0717 | DNA polymerase III subunit delta'. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.631 |
| SFBM_1501 | SFBM_0058 | SFBM_1501 | SFBM_0058 | Single-strand binding protein. | Single-stranded DNA-binding protein. | 0.910 |
| SFBM_1501 | SFBM_0082 | SFBM_1501 | SFBM_0082 | Single-strand binding protein. | DNA polymerase III, alpha subunit. | 0.825 |
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