STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CHH_0620Putative DUF1882 domain protein; Pfam match to PF08966.7 DUF1882. (180 aa)    
Predicted Functional Partners:
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
    0.826
fur
Ferric uptake regulation protein; Pfam match to PF01475.15 FUR; Belongs to the Fur family.
  
    0.808
lysS
lysyl-tRNA synthetase; Pfam matches to PF00152.16 tRNA-synt_2, and to PF01336.21 tRNA_anti-codon; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.802
CHH_0621
Putative sporulation domain protein; Pfam match to PF05036.9 SPOR.
       0.787
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.787
gatC
Glu-tRNA(Gln) amidotransferase, subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.783
CHH_0615
Type II/IV secretion system protein, PilT/PilU family; Pfam match to PF00437.16 T2SSE.
       0.783
CHH_0616
Putative membrane protein, CvpA family; Pfam match to PF02674.12 Colicin_V.
       0.783
coaX
Pantothenate kinase, type III; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.554
CHH_0611
Hypothetical protein; Possible beta-barrel assembly machinery complex protein BamE.
       0.554
Your Current Organism:
Campylobacter hyointestinalis
NCBI taxonomy Id: 1031746
Other names: C. hyointestinalis subsp. hyointestinalis LMG 9260, Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260, Campylobacter hyointestinalis subsp. hyointestinalis str. LMG 9260, Campylobacter hyointestinalis subsp. hyointestinalis strain LMG 9260
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