G5I_00319 protein (Acromyrmex echinatior) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G5I_00319

PID domain-containing protein. (296 aa)

Predicted Functional Partners:

G5I_04221

0.661

G5I_07113

0.576

G5I_14633

0.543

G5I_00823

0.486

G5I_11173

0.452

G5I_05607

0.406

Your Current Organism:

Acromyrmex echinatior

NCBI taxonomy Id: 103372
Other names: A. echinatior, Panamanian leafcutter ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G5I_00319	G5I_00823	F4W4J8	F4W5X3	PID domain-containing protein.	Neogenin.	0.486
G5I_00319	G5I_04221	F4W4J8	F4WF15	PID domain-containing protein.	Intersectin-1.	0.661
G5I_00319	G5I_05607	F4W4J8	F4WIT2	PID domain-containing protein.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.406
G5I_00319	G5I_07113	F4W4J8	F4WMX5	PID domain-containing protein.	Low-density lipoprotein receptor-related protein 2.	0.576
G5I_00319	G5I_11173	F4W4J8	F4WYV9	PID domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.452
G5I_00319	G5I_14633	F4W4J8	F4X887	PID domain-containing protein.	AP complex subunit beta.	0.543
G5I_00823	G5I_00319	F4W5X3	F4W4J8	Neogenin.	PID domain-containing protein.	0.486
G5I_04221	G5I_00319	F4WF15	F4W4J8	Intersectin-1.	PID domain-containing protein.	0.661
G5I_04221	G5I_05607	F4WF15	F4WIT2	Intersectin-1.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.994
G5I_04221	G5I_11173	F4WF15	F4WYV9	Intersectin-1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.982
G5I_04221	G5I_14633	F4WF15	F4X887	Intersectin-1.	AP complex subunit beta.	0.999
G5I_05607	G5I_00319	F4WIT2	F4W4J8	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	PID domain-containing protein.	0.406
G5I_05607	G5I_04221	F4WIT2	F4WF15	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Intersectin-1.	0.994
G5I_05607	G5I_07113	F4WIT2	F4WMX5	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Low-density lipoprotein receptor-related protein 2.	0.424
G5I_05607	G5I_11173	F4WIT2	F4WYV9	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.933
G5I_05607	G5I_14633	F4WIT2	F4X887	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit beta.	0.999
G5I_07113	G5I_00319	F4WMX5	F4W4J8	Low-density lipoprotein receptor-related protein 2.	PID domain-containing protein.	0.576
G5I_07113	G5I_05607	F4WMX5	F4WIT2	Low-density lipoprotein receptor-related protein 2.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.424
G5I_07113	G5I_11173	F4WMX5	F4WYV9	Low-density lipoprotein receptor-related protein 2.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.432
G5I_11173	G5I_00319	F4WYV9	F4W4J8	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	PID domain-containing protein.	0.452