Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
G5I_05507 | G5I_09908 | F4WII3 | F4WVH0 | NADPH-dependent diflavin oxidoreductase 1. | Cytochrome P450 9e2; Belongs to the cytochrome P450 family. | 0.559 |
G5I_09908 | G5I_05507 | F4WVH0 | F4WII3 | Cytochrome P450 9e2; Belongs to the cytochrome P450 family. | NADPH-dependent diflavin oxidoreductase 1. | 0.559 |
G5I_09908 | G5I_12024 | F4WVH0 | F4X166 | Cytochrome P450 9e2; Belongs to the cytochrome P450 family. | Cytochrome P450 307a1; Belongs to the cytochrome P450 family. | 0.505 |
G5I_09908 | MED17 | F4WVH0 | F4WSX7 | Cytochrome P450 9e2; Belongs to the cytochrome P450 family. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.403 |
G5I_12024 | G5I_09908 | F4X166 | F4WVH0 | Cytochrome P450 307a1; Belongs to the cytochrome P450 family. | Cytochrome P450 9e2; Belongs to the cytochrome P450 family. | 0.505 |
MED17 | G5I_09908 | F4WSX7 | F4WVH0 | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Cytochrome P450 9e2; Belongs to the cytochrome P450 family. | 0.403 |