STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G5I_10048Putative ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family. (740 aa)    
Predicted Functional Partners:
G5I_05549
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 0.992
G5I_02953
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.991
G5I_10455
Suppressor of SWI4 1-like protein.
   
   0.988
G5I_12451
WD repeat-containing protein 3.
   
   0.987
G5I_10910
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.984
G5I_12030
MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein.
   
 
 0.980
G5I_04394
U3 small nucleolar RNA-associated protein 14-like protein A.
   
 0.979
G5I_09141
Nucleolar protein 14-like protein.
   
 0.966
G5I_09806
Ribosome biogenesis protein BMS1-like protein.
   
 
 0.961
G5I_04246
RNA-binding protein 34.
   
  0.958
Your Current Organism:
Acromyrmex echinatior
NCBI taxonomy Id: 103372
Other names: A. echinatior, Panamanian leafcutter ant
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