G5I_13344 protein (Acromyrmex echinatior) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G5I_13344

Nuclear pore membrane glycoprotein 210. (1920 aa)

Predicted Functional Partners:

G5I_03256

0.986

G5I_08086

0.980

G5I_01720

0.975

G5I_05337

0.975

G5I_04329

0.972

G5I_01917

0.966

G5I_01556

0.963

G5I_11779

0.963

G5I_01630

0.952

G5I_14391

0.952

Your Current Organism:

Acromyrmex echinatior

NCBI taxonomy Id: 103372
Other names: A. echinatior, Panamanian leafcutter ant

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G5I_01556	G5I_01630	F4W7X9	F4W853	Nucleoporin NUP188-like protein.	Nuclear pore complex protein Nup205.	0.991
G5I_01556	G5I_01720	F4W7X9	F4W8D9	Nucleoporin NUP188-like protein.	Nuclear pore protein.	0.999
G5I_01556	G5I_01917	F4W7X9	F4W8X5	Nucleoporin NUP188-like protein.	Nucleoporin Ndc1.	0.960
G5I_01556	G5I_03256	F4W7X9	F4WCI0	Nucleoporin NUP188-like protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.989
G5I_01556	G5I_04329	F4W7X9	F4WFC2	Nucleoporin NUP188-like protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.978
G5I_01556	G5I_05337	F4W7X9	F4WHZ0	Nucleoporin NUP188-like protein.	Nucleoporin seh1-B; Belongs to the WD repeat SEC13 family.	0.924
G5I_01556	G5I_08086	F4W7X9	F4WQG7	Nucleoporin NUP188-like protein.	Nuclear pore complex protein Nup155.	0.993
G5I_01556	G5I_11779	F4W7X9	F4X0K0	Nucleoporin NUP188-like protein.	Nucleoporin Nup43.	0.962
G5I_01556	G5I_13344	F4W7X9	F4X4S2	Nucleoporin NUP188-like protein.	Nuclear pore membrane glycoprotein 210.	0.963
G5I_01556	G5I_14391	F4W7X9	F4X7K9	Nucleoporin NUP188-like protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.956
G5I_01630	G5I_01556	F4W853	F4W7X9	Nuclear pore complex protein Nup205.	Nucleoporin NUP188-like protein.	0.991
G5I_01630	G5I_01720	F4W853	F4W8D9	Nuclear pore complex protein Nup205.	Nuclear pore protein.	0.999
G5I_01630	G5I_01917	F4W853	F4W8X5	Nuclear pore complex protein Nup205.	Nucleoporin Ndc1.	0.965
G5I_01630	G5I_03256	F4W853	F4WCI0	Nuclear pore complex protein Nup205.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.999
G5I_01630	G5I_04329	F4W853	F4WFC2	Nuclear pore complex protein Nup205.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.996
G5I_01630	G5I_05337	F4W853	F4WHZ0	Nuclear pore complex protein Nup205.	Nucleoporin seh1-B; Belongs to the WD repeat SEC13 family.	0.991
G5I_01630	G5I_08086	F4W853	F4WQG7	Nuclear pore complex protein Nup205.	Nuclear pore complex protein Nup155.	0.999
G5I_01630	G5I_11779	F4W853	F4X0K0	Nuclear pore complex protein Nup205.	Nucleoporin Nup43.	0.983
G5I_01630	G5I_13344	F4W853	F4X4S2	Nuclear pore complex protein Nup205.	Nuclear pore membrane glycoprotein 210.	0.952
G5I_01630	G5I_14391	F4W853	F4X7K9	Nuclear pore complex protein Nup205.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.996