STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000285535_03828Unannotated protein. (130 aa)    
Predicted Functional Partners:
E1I69_02955
Unannotated protein.
 
  
 0.975
ytxJ
Unannotated protein.
  
    0.941
rpoD
Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
    0.636
E1I69_12625
Unannotated protein.
  
    0.576
E1I69_03540
Unannotated protein.
  
    0.519
aroF
Unannotated protein.
       0.510
E1I69_02960
Unannotated protein.
       0.505
E1I69_01940
Unannotated protein; Belongs to the UPF0302 family.
  
  
 0.496
mreD
Unannotated protein.
  
     0.490
E1I69_03230
Unannotated protein; Belongs to the Dps family.
   
  
 0.480
Your Current Organism:
Bacillus timonensis
NCBI taxonomy Id: 1033734
Other names: B. timonensis, Bacillus sp. 10403023, CSUR P162, DSM 25372, strain 10403023, strain MM10403188
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.