STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20814.1Putative Holliday junction resolvase protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (148 aa)    
Predicted Functional Partners:
ERJ20813.1
Putative ACR protein; Belongs to the UPF0301 (AlgH) family.
  
  
 0.938
gshB
Glutathione synthetase protein; Belongs to the prokaryotic GSH synthase family.
 
  
 0.732
pyrB
Aspartate carbamoyltransferase protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.695
pyrR
Bifunctional protein PyrR.
  
    0.667
tonB
TonB protein.
  
    0.615
ERJ20816.1
ACT domain protein.
       0.615
miaA
tRNA dimethylallyltransferase protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.610
alaS
Alanine--tRNA ligase protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
 0.580
ERJ19816.1
Alanine--tRNA ligase protein; Overlaps CDS with the same product name.
  
  
 0.580
rpsU3
30S ribosomal protein S21 3; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.474
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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