Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dnaE | holC | SSPSH_001108 | SSPSH_002088 | DNA polymerase III subunit alpha protein. | DNA polymerase III subunit chi protein. | 0.977 |
| dnaE | rnhA | SSPSH_001108 | SSPSH_001599 | DNA polymerase III subunit alpha protein. | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.515 |
| dnaE | ssb | SSPSH_001108 | SSPSH_000261 | DNA polymerase III subunit alpha protein. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.977 |
| dnaE | topA | SSPSH_001108 | SSPSH_003477 | DNA polymerase III subunit alpha protein. | DNA topoisomerase protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DN [...] | 0.495 |
| dnaE2 | holC | SSPSH_002997 | SSPSH_002088 | Error-prone DNA polymerase protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit chi protein. | 0.977 |
| dnaE2 | rnhA | SSPSH_002997 | SSPSH_001599 | Error-prone DNA polymerase protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.515 |
| dnaE2 | ssb | SSPSH_002997 | SSPSH_000261 | Error-prone DNA polymerase protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.973 |
| dnaE2 | topA | SSPSH_002997 | SSPSH_003477 | Error-prone DNA polymerase protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA topoisomerase protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DN [...] | 0.495 |
| holC | dnaE | SSPSH_002088 | SSPSH_001108 | DNA polymerase III subunit chi protein. | DNA polymerase III subunit alpha protein. | 0.977 |
| holC | dnaE2 | SSPSH_002088 | SSPSH_002997 | DNA polymerase III subunit chi protein. | Error-prone DNA polymerase protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.977 |
| holC | rnhA | SSPSH_002088 | SSPSH_001599 | DNA polymerase III subunit chi protein. | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.647 |
| holC | ssb | SSPSH_002088 | SSPSH_000261 | DNA polymerase III subunit chi protein. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.972 |
| priA | ssb | SSPSH_000625 | SSPSH_000261 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.970 |
| rnhA | dnaE | SSPSH_001599 | SSPSH_001108 | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase III subunit alpha protein. | 0.515 |
| rnhA | dnaE2 | SSPSH_001599 | SSPSH_002997 | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Error-prone DNA polymerase protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.515 |
| rnhA | holC | SSPSH_001599 | SSPSH_002088 | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase III subunit chi protein. | 0.647 |
| rnhA | sbcB | SSPSH_001599 | SSPSH_000367 | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Exodeoxyribonuclease I protein. | 0.417 |
| rnhA | ssb | SSPSH_001599 | SSPSH_000261 | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.927 |
| rnhA | topA | SSPSH_001599 | SSPSH_003477 | Ribonuclease H protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA topoisomerase protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DN [...] | 0.578 |
| rpsB | rpsF | SSPSH_001093 | SSPSH_002052 | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
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