STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20929.1Ral secretion pathway protein O; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (293 aa)    
Predicted Functional Partners:
pilC
Type 4 fimbrial assembly protein PilC.
 
  
 0.945
pilB
Type 4 fimbrial assembly protein PilB.
 
 
 0.893
xcpR
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.890
gspF
T2aSS secretion system inner membrane platform protein GspF.
 
  
 0.873
pilT
Twitching motility protein.
 
   
 0.869
smf
DNA processing chain A protein.
  
  
 0.827
comA
DNA uptake-competence protein.
 
  
 0.818
uptC
Type II secretion system protein-like protein.
  
   
 0.802
pilU
Pilus retraction ATPase PilU protein.
  
   
 0.797
pilM
Fimbrial assembly membrane protein; Overlaps another CDS with the same product name.
 
  
 0.791
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.