STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20599.1Sigma-54 factor protein; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase protein; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
  
 0.841
ERJ17851.1
Putative phosphoribosyl transferase protein.
 
    0.688
comM
Competence related protein.
 
  
 0.632
smf
DNA processing chain A protein.
 
    0.624
lpoA
Penicillin-binding protein activator LpoA.
     
 0.582
comA
DNA uptake-competence protein.
  
    0.466
rsmI
Ribosomal RNA small subunit methyltransferase I protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.448
ERJ19277.1
PAS sensor diguanylate cyclase protein.
  
    0.439
ERJ20234.1
Two-component system chemotaxis family CheB-CheR fusion protein.
  
    0.413
ERJ19794.1
Sensor diguanylate cyclase-phosphodiesterase PAS domain-containing protein.
   
    0.408
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.