STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfdCInner membrane protein YfdC. (286 aa)    
Predicted Functional Partners:
ERJ18108.1
Carbonic anhydrase protein.
  
    0.723
ERJ20289.1
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
       0.563
ERJ20291.1
Glutamine cyclotransferase protein.
       0.539
ERJ18770.1
Hypothetical protein.
  
     0.519
ERJ18541.1
Hypothetical protein.
 
     0.516
ERJ19982.1
Formate dehydrogenase alpha subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.451
gltB
Glutamate synthase large chain protein.
   
  
 0.431
nasA
Nitrate reductase large subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.411
ERJ19390.1
Pyrophosphoryl-undecaprenol N-acetylglucosamine transferase protein.
  
     0.405
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
Server load: low (30%) [HD]