STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xanBXanthan biosynthesis protein XanB; Belongs to the mannose-6-phosphate isomerase type 2 family. (496 aa)    
Predicted Functional Partners:
manB
Phosphomannomutase protein.
 
 0.997
wcaJ
Putative UDP-glucose lipid carrier transferase protein.
  
 
 0.972
ERJ20279.1
Hypothetical protein.
  
 
 0.963
pgi
Glucose-6-phosphate isomerase protein; Belongs to the GPI family.
  
 
 0.907
wzc
Protein-tyrosine kinase chainlength regulator in capsular polysaccharide biosynthesi.
 
 
 0.898
ERJ18012.1
Mannose-1-phosphate guanylyltransferase protein.
  
 
 0.893
ERJ18312.1
UDPglucose 6-dehydrogenase protein.
 
 
 0.878
glmM
Phosphoglucosamine mutase protein; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
 
 0.853
sps
Sucrose phosphate synthase protein.
  
 
 0.849
ERJ18518.1
Capsular polysaccharide biosynthesis protein.
  
 
 0.847
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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