STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20468.1Mandelate racemase protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (391 aa)    
Predicted Functional Partners:
ERJ20466.1
TRAP-T family transporter protein.
 
     0.813
ERJ20137.1
Amidohydrolase 2 protein.
 
  
 0.805
ERJ18551.1
24-dihydroxyhept-2-ene-17-dioic acid aldolase protein; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.755
ERJ20467.1
Tripartite tricarboxylate transporter TctB protein.
       0.727
ERJ20792.1
Adenosine kinase protein.
    
 0.717
ERJ19558.1
Strictosidine synthase protein.
    
 0.716
prdF
Proline racemase protein; Belongs to the proline racemase family.
     
 0.678
ERJ19752.1
Glucose-fructose oxidoreductase protein.
    
  0.652
ERJ20758.1
Xylulokinase protein.
     
 0.651
dapA
4-hydroxy-tetrahydrodipicolinate synthase protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.643
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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