STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppFPutative oligopeptide transport ATP-binding ABC transport protein; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
ERJ20498.1
Binding-protein-dependent transport systems inner membrane component; Overlaps CDS with the same product name.
 
 0.992
ERJ20106.1
ABC transporter permease protein.
 
 0.992
ERJ20497.1
Binding-protein-dependent transport systems inner membrane component.
 
 0.973
ERJ20107.1
ABC transporter permease protein; Overlaps CDS with the same product name.
 
 0.947
oppC
Oligopeptide transport system permease protein.
 
 0.921
oppA
Oligopeptide ABC transporter periplasmic binding protein.
 
 0.899
oppB
Oligopeptide transport system permease protein.
 
 0.898
ERJ20503.1
Amidohydrolase 2 protein.
       0.773
ERJ20392.1
Putative ABC transporter ATP-binding subunit protein; Belongs to the ABC transporter superfamily.
 
 
0.736
ERJ20108.1
ABC transporter substrate-binding protein.
 
 
 0.711
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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