STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20208.1Pantoate--beta-alanine ligase protein. (211 aa)    
Predicted Functional Partners:
atuF
Geranyl-CoA carboxylase alpha-subunit protein.
   
   0.507
atuA
Expressed protein with apparent function in citronellol catabolism.
       0.501
atuC
Geranyl-CoA carboxylase beta-subunit protein.
       0.492
ERJ20206.1
Acyl-CoA dehydrogenase protein.
       0.492
ERJ20204.1
citronellyl-CoA dehydrogenase protein.
       0.451
ERJ20209.1
Alcohol dehydrogenase protein.
       0.449
atuE
Putative isohexenylglutaconyl-CoA hydratase protein.
       0.438
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.