STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
np20Transcriptional regulator np20 protein; Belongs to the Fur family. (164 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.864
gltB
Glutamate synthase large chain protein.
    
 0.819
ERJ20014.1
MerC mercury resistance protein.
       0.695
katE
Catalase HPII protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.611
ERJ20013.1
Hypothetical protein.
   
   0.564
sitB
ABC Mn+2-Fe+2 transporter ATPase subunit SitB protein.
 
  
 0.513
glnA
Glutamine synthetase protein.
  
 
  0.489
rpoH
RNA polymerase sigma factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
 
 0.483
rpoD
RNA polymerase sigma factor RpoD protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.483
ERJ18816.1
Two-component system OmpR family phosphate regulon sensor histidine kinase PhoR protein.
  
 
 0.482
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.