STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20084.1O-acetylhomoserine -lyase protein. (137 aa)    
Predicted Functional Partners:
metB
Homocysteine synthase protein.
   
  0.964
metZ
O-succinylhomoserine sulfhydrylase protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
   
  0.940
ERJ18950.1
Cystathionine beta-lyase protein.
 
   
  0.920
ERJ20085.1
Membrane lipoprotein.
       0.773
msrB
Methionine-R-sulfoxide reductase protein.
 
      0.692
metH
Methionine synthase protein.
    
  0.655
metH2
5-methyltetrahydrofolate-homocysteine methyltransferase protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.655
cysM
Cysteine synthase B protein; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.617
metF
Methylenetetrahydrofolate reductase protein; Belongs to the methylenetetrahydrofolate reductase family.
    
  0.616
ahcY
Adenosylhomocysteinase protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
  0.616
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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