STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ20116.1Dihydroorotase protein. (423 aa)    
Predicted Functional Partners:
ERJ20112.1
Carbon-monoxide dehydrogenase small subunit protein; Overlaps another CDS with the same product name.
 
     0.878
ERJ20115.1
Carbon-monoxide dehydrogenase large subunit protein.
 
     0.858
ERJ20111.1
S-ribosylhomocysteine lyase protein.
 
     0.854
cutM
CutM protein.
 
     0.840
selA
L-seryl-tRNA selenium transferase protein.
 
  
 0.823
ERJ20113.1
Carbon-monoxide dehydrogenase small subunit protein; Overlaps CDS with the same product name.
       0.805
ERJ20117.1
5'-methylthioadenosine phosphorylase protein.
 
     0.606
ERJ20108.1
ABC transporter substrate-binding protein.
 
     0.538
ERJ20118.1
Hypothetical protein.
 
     0.504
ERJ20431.1
Proline iminopeptidase protein.
  
     0.446
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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