STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ19838.1Ribosomal protein L24 conjectural. (65 aa)    
Predicted Functional Partners:
ERJ19982.1
Formate dehydrogenase alpha subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.704
ycbX
Putative 2Fe-2S cluster-containing protein.
    
 0.674
ERJ20122.1
ferredoxin--NAD+ reductase protein.
    
 0.673
ERJ17829.1
ferredoxin--NAD+ reductase protein.
    
 0.673
ERJ17576.1
2Fe-2S iron-sulfur cluster binding domain protein.
    
 0.673
paaE
Putative phenylacetic acid degradation NADH oxidoreductase PaaE protein.
    
 0.673
ERJ18190.1
Dioxygenase protein.
    
  0.667
ERJ17588.1
Catechol 23-dioxygenase protein.
    
  0.667
ribBA
Bifunctional 34-dihydroxy-2-butanone 4-phosphate synthase-GTP cyclohydrolase II RibBA protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.656
ribA
Bifunctional riboflavin biosynthesis protein RibAB; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
    
  0.656
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.