STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDSufD protein. (442 aa)    
Predicted Functional Partners:
ERJ19952.1
Selenocysteine lyase protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.999
sufC
Putative transport protein.
 
 0.999
sufB
ABC transporter-associated protein.
 
0.999
ERJ20703.1
IscU protein.
  
  
 0.848
ERJ20080.1
Selenocysteine lyase protein.
 
 0.813
ERJ19554.1
N-acetylmuramic acid 6-phosphate etherase protein.
 
   
 0.787
iscA
Iron-binding protein IscA; Belongs to the HesB/IscA family.
  
 
 0.698
ERJ19951.1
Putative dioxygenase ferredoxin subunit protein.
 
     0.687
erpA
Putative iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG.
  
 
 0.581
ERJ19774.1
Ornithine carbamoyltransferase protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     
 0.482
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.