STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsrRHTH-type transcriptional regulator NsrR protein. (143 aa)    
Predicted Functional Partners:
hmp
Flavohemoprotein; Belongs to the globin family.
 
   
 0.904
iscS
Cysteine desulfurase protein; Overlaps another CDS with the same product name.
  
 
 0.804
ERJ20705.1
Cysteine desulfurase protein; Overlaps another CDS with the same product name.
  
 
 0.804
ERJ20703.1
IscU protein.
  
  
 0.621
ERJ19438.1
Putative dioxygenase ferredoxin subunit protein.
       0.564
thiF
Thiamine biosynthesis protein.
  
 
 0.537
ERJ19982.1
Formate dehydrogenase alpha subunit protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.525
ERJ19435.1
Hypothetical protein.
       0.481
ERJ19277.1
PAS sensor diguanylate cyclase protein.
     
 0.471
ERJ18232.1
NnrS protein.
 
  
 0.462
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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