STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ18928.1Sigma-54-dependent transcriptional response regulator protein. (339 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.919
mifS
MifS protein.
 
  
 0.826
ERJ17615.1
Two-component system chemotaxis family CheB-CheR fusion protein; Overlaps another CDS with the same product name.
  
 
 0.824
ERJ17616.1
Two-component system chemotaxis family CheB-CheR fusion protein; Overlaps CDS with the same product name.
  
 
 0.823
ERJ20234.1
Two-component system chemotaxis family CheB-CheR fusion protein.
    
 0.801
ERJ19277.1
PAS sensor diguanylate cyclase protein.
    
 0.798
ERJ18394.1
Two-component system NarL family capsular synthesis sensor histidine kinase RcsC protein.
    
 0.793
ERJ18900.1
Two-component system chemotaxis family CheB-CheR fusion protein.
    
 0.788
ERJ18816.1
Two-component system OmpR family phosphate regulon sensor histidine kinase PhoR protein.
    
 0.783
ERJ18955.1
Two-component system NarL family sensor histidine kinase BarA protein.
    
 0.780
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.