STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ19016.1Octaprenyl-diphosphate synthase protein. (85 aa)    
Predicted Functional Partners:
mexF
HAE1 family efflux pump permease component MexF protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     0.993
oprN
Outer membrane protein.
 
  0.962
ERJ19735.1
Efflux transporter RND family MFP subunit protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.880
ERJ19737.1
RND efflux system outer membrane protein NodT family protein.
 
  0.842
ibeB
Putative outer membrane protein; Overlaps another CDS with the same product name.
  
  0.819
ERJ19301.1
Putative outer membrane protein; Overlaps CDS with the same product name.
 
  0.805
ERJ19338.1
ABC efflux system outer membrane lipoprotein NodT.
 
  0.804
mexE
HAE1 family efflux pump MFP component MexE protein.
  
  0.604
ERJ19302.1
RND multidrug efflux membrane permease protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.600
ERJ19073.1
Putative outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 0.576
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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