STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ19027.15-methyltetrahydrofolate--homocysteine methyltransferase protein. (447 aa)    
Predicted Functional Partners:
lolC
Lipoprotein releasing system transmembrane protein.
  
 0.993
ERJ19028.1
Putative outer membrane protein.
 
    0.763
ERJ19176.1
Putative inner membrane transport permease protein.
  
 
 0.605
ERJ19216.1
Hypothetical protein.
  
     0.604
czcB
Cation efflux system protein; Overlaps another CDS with the same product name.
 
 
 0.553
czcC
Cation efflux system protein; Overlaps another CDS with the same product name.
 
 
 
 0.538
sfuB
Iron transporter-like protein.
  
 
  0.488
ERJ19871.1
Metal ion efflux pump RND family membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.487
ERJ19735.1
Efflux transporter RND family MFP subunit protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.487
ERJ19302.1
RND multidrug efflux membrane permease protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.487
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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