STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVMotility protein FimV. (639 aa)    
Predicted Functional Partners:
ERJ18871.1
Tfp pilus assembly protein FimV-like protein.
 
     0.876
asd-2
Aspartate-semialdehyde dehydrogenase protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
    0.772
truA
tRNA pseudouridine synthase A protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.672
ERJ18816.1
Two-component system OmpR family phosphate regulon sensor histidine kinase PhoR protein.
   
 
 0.660
nudJ
NAD+ diphosphatase protein; Belongs to the Nudix hydrolase family. NudJ subfamily.
 
 
 0.628
ERJ17891.1
Tfp pilus assembly protein PilW-like protein.
  
    0.622
leuB
3-isopropylmalate dehydrogenase protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
  
    0.608
pilN
Fimbrial assembly membrane protein; Overlaps another CDS with the same product name.
  
    0.553
leuD
3-isopropylmalate dehydratase small subunit protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.503
rpoE
RNA polymerase sigma factor protein; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.497
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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