STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ18878.1Tetratricopeptide repeat protein. (493 aa)    
Predicted Functional Partners:
ribBA
Bifunctional 34-dihydroxy-2-butanone 4-phosphate synthase-GTP cyclohydrolase II RibBA protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.697
ribA
Bifunctional riboflavin biosynthesis protein RibAB; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
    
  0.697
ERJ19277.1
PAS sensor diguanylate cyclase protein.
    
 0.663
aroC
Chorismate synthase protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
    0.597
ERJ17616.1
Two-component system chemotaxis family CheB-CheR fusion protein; Overlaps CDS with the same product name.
    
  0.589
ERJ17615.1
Two-component system chemotaxis family CheB-CheR fusion protein; Overlaps another CDS with the same product name.
    
 0.583
ERJ18679.1
Putative membrane protein.
  
     0.562
ycjI
Putative carboxypeptidase protein.
 
     0.539
prmB
50S ribosomal protein L3 glutamine methyltransferase; Belongs to the protein N5-glutamine methyltransferase family.
       0.516
ERJ18893.1
Two-component system chemotaxis family sensor kinase CheA protein.
   
 
 0.486
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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