STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciIProtein YciI. (99 aa)    
Predicted Functional Partners:
yhbN
Putative ABC superfamily transport protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
     0.710
ERJ18687.1
BolA-YrbA family protein; Belongs to the BolA/IbaG family.
       0.695
holA
DNA polymerase III delta subunit protein.
  
     0.613
hflD
High frequency lysogenization protein HflD.
  
     0.576
ERJ18689.1
Sua5-YciO-YrdC-YwlC family protein; Belongs to the SUA5 family.
       0.550
ERJ18696.1
1-deoxy-D-xylulose-5-phosphate reductoisomerase protein.
  
    0.529
tonB
TonB protein.
 
    0.503
ERJ18244.1
FixH domain containing protein.
  
     0.500
metG
Methionine--tRNA ligase protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
    0.486
ERJ18686.1
Putative outer membrane receptor for iron transport protein.
       0.476
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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