STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpASegregation protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (286 aa)    
Predicted Functional Partners:
ERJ18692.1
Segregation protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
smc
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.985
ERJ17615.1
Two-component system chemotaxis family CheB-CheR fusion protein; Overlaps another CDS with the same product name.
  
 
 0.953
ERJ17751.1
Hypothetical protein.
  
 
 0.933
trpS
Tryptophan--tRNA ligase protein; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.750
cmk1
Cytidylate kinase 1 protein.
  
  
 0.666
panC
Pantothenate synthetase protein; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
    0.573
ftsE
ABC-type cell division-associated export system ATPase component FtsE protein; Part of the ABC transporter FtsEX involved in cellular division.
  
    0.555
rluB
Ribosomal large subunit pseudouridine synthase B protein; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.529
ERJ18689.1
Sua5-YciO-YrdC-YwlC family protein; Belongs to the SUA5 family.
       0.501
Your Current Organism:
Salinisphaera shabanensis
NCBI taxonomy Id: 1033802
Other names: S. shabanensis E1L3A, Salinisphaera shabanensis E1L3A, Salinisphaera shabanensis str. E1L3A, Salinisphaera shabanensis strain E1L3A
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